Intercellular and long-range RNA trafficking in plants

Document Type : Scientific-Extensional Article

Author

PhD Student in Agricultural Biotechnology, Agronomy and Plant Breeding Department, University College of Agriculture & Natural Resources, University of Tehran, Iran.

Abstract

Plants are uncovered to manifold environmental factors every day, so vigilant reprogramming is compulsory to establish an equilibrium between stress responses and plant growth and development processes. In higher plants, Ribonucleic acids (RNAs) can move between cells, tissues, and also over long distances via phloem. All classes of RNAs have been found in phloem samples, but so far, it is not well understood how the transfer of RNA is carried out mechanistically. The noteworthy point is that small RNAs and some mRNAs can move from cell to cell or integrally in the plant and in this way act as a mobile silencing agent inside the plant. In this article, we will discuss the classification of mobile RNAs, the biological functions of RNA transfer, including their role in plant immunity and morphogenesis, transfer mechanisms, including: sequences that facilitate RNA to transfer, RNA binding proteins, RNA transfer by regulation of plasmodesmata permeability, potential alternative pathways in RNA trafficking like plant pseudo-exosomes. A deeper understanding of this biological information is crucial to open new and interesting avenues for breeding applications, including the identifications and development of resistant crops to biotic and abiotic stresses.

Keywords


Buhtz, A., Pieritz, J., Springer, F., and Kehr, J. (2010). Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC plant biology 10, 64.
Cai, Q., Qiao, L., Wang, M., He, B., Lin, F.-M., Palmquist, J., Huang, S.-D., and Jin, H. (2018). Plants send small RNAs in extracellular vesicles to fungal pathogen to silence virulence genes. Science 360, 1126-1129.
Ghate, T. H., Sharma, P., Kondhare, K. R., Hannapel, D. J., and Banerjee, A. K. (2017). The mobile RNAs, StBEL11 and StBEL29, suppress growth of tubers in potato. Plant molecular biology 93, 563-578.
Guan, D., Yan, B., Thieme, C., Hua, J., Zhu, H., Boheler, K. R., Zhao, Z., Kragler, F., Xia, Y., and Zhang, S. (2016). PlaMoM: a comprehensive database compiles plant mobile macromolecules. Nucleic acids research, gkw988.
Ham, B.-K., and Lucas, W. J. (2017). Phloem-mobile RNAs as systemic signaling agents. Annual review of plant biology 68, 173-195.
Haywood, V., Yu, T. S., Huang, N. C., and Lucas, W. J. (2005). Phloem long‐distance trafficking of GIBBERELLIC ACID‐INSENSITIVE RNA regulates leaf development. The Plant Journal 42, 49-68.
Hochberg-Laufer, H., Schwed-Gross, A., Neugebauer, K. M., and Shav-Tal, Y. (2019). Uncoupling of nucleo-cytoplasmic RNA export and localization during stress. Nucleic acids research 47, 4778-4797.
Kehr, J., and Kragler, F. (2018). Long distance RNA movement. New Phytologist 218, 29-40.
Kim, M., Canio, W., Kessler, S., and Sinha, N. (2001). Developmental changes due to long-distance movement of a homeobox fusion transcript in tomato. Science 293, 287-289.
Lin, M.-K., Lee, Y.-J., Lough, T. J., Phinney, B. S., and Lucas, W. J. (2009). Analysis of the pumpkin phloem proteome provides insights into angiosperm sieve tube function. Molecular & Cellular Proteomics 8, 343-356.
Liu, L., and Chen, X. (2018). Intercellular and systemic trafficking of RNAs in plants. Nature plants 4, 869.
Lucas, W. J., Bouché-Pillon, S., Jackson, D. P., Nguyen, L., Baker, L., Ding, B., and Hake, S. (1995). Selective trafficking of KNOTTED1 homeodomain protein and its mRNA through plasmodesmata. Science 270, 1980-1983.
Mlotshwa, S., Voinnet, O., Mette, M. F., Matzke, M., Vaucheret, H., Ding, S. W., Pruss, G., and Vance, V. B. (2002). RNA silencing and the mobile silencing signal. The Plant Cell 14, S289-S301.
Mosa, K. A., Ismail, A., and Helmy, M. (2017). "Plant stress tolerance: an integrated omics approach," Springer.
Ostendorp, A., Pahlow, S., Krüßel, L., Hanhart, P., Garbe, M. Y., Deke, J., Giavalisco, P., and Kehr, J. (2017). Functional analysis of Brassica napus phloem protein and ribonucleoprotein complexes. New Phytologist 214, 1188-1197.
Peña, E. J., and Heinlein, M. (2022). In Vivo Visualization of Mobile mRNA Particles in Plants Using BglG. In "Plasmodesmata", pp. 411-426. Springer.
Rutter, B. D., and Innes, R. W. (2017). Extracellular vesicles isolated from the leaf apoplast carry stress-response proteins. Plant Physiology 173, 728-741.
Vaucheret, H. (2006). Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes & development 20, 759-771.
Xiao, J., Feng, S., Wang, X., Long, K., Luo, Y., Wang, Y., Ma, J., Tang, Q., Jin, L., and Li, X. (2018). Identification of exosome-like nanoparticle-derived microRNAs from 11 edible fruits and vegetables. PeerJ 6, e5186.
Zhang, W., Thieme, C. J., Kollwig, G., Apelt, F., Yang, L., Winter, N., Andresen, N., Walther, D., and Kragler, F. (2016). tRNA-related sequences trigger systemic mRNA transport in plants. The Plant Cell 28, 1237-1249.